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  • Written by Matthew Farrer, Professor of Neurology, University of Florida
Newly discovered genetic variant that causes Parkinson’s disease clarifies why the condition develops and how to halt it

Parkinson’s disease is a neurodegenerative movement disorder that progresses relentlessly[1]. It gradually impairs a person’s ability to function until they ultimately become immobile and often develop dementia. In the U.S. alone, over a million people are afflicted with Parkinson’s, and new cases[2] and overall numbers[3] are steadily increasing.

There is currently no treatment to slow or halt Parkinson’s disease. Available drugs don’t slow disease progression and can treat only certain symptoms. Medications that work early in the disease, however, such as Levodopa[4], generally become ineffective over the years, necessitating increased doses that can lead to disabling side effects. Without understanding the fundamental molecular cause[5] of Parkinson’s, it’s improbable that researchers will be able to develop a medication to stop the disease from steadily worsening in patients.

Many factors may contribute[6] to the development of Parkinson’s, both environmental and genetic. Until recently, underlying genetic causes of the disease were unknown. Most cases of Parkinson’s aren’t inherited but sporadic, and early studies[7] suggested a genetic basis was improbable.

Nevertheless, everything in biology has a genetic foundation. As a geneticist and molecular neuroscientist[8], I have devoted my career to predicting and preventing Parkinson’s disease. In our newly published research, my team and I discovered a new genetic variant linked to Parkinson’s[9] that sheds light on the evolutionary origin of multiple forms of familial parkinsonism, opening doors to better understand and treat the disease.

Genetic linkages and associations

In the mid-1990s[10], researchers started looking into whether genetic differences between people with or without Parkinson’s might identify specific genes or genetic variants that cause the disease. In general, I and other geneticists use two approaches to map the genetic blueprint of Parkinson’s: linkage analysis and association studies.

Linkage analysis[11] focuses on rare families where parkinsonism[12], or neurological conditions with similar symptoms to Parkinson’s, is passed down. This technique looks for cases where a disease-causing version of the gene and Parkinson’s appear to be passed down in the same person. It requires information on your family tree, clinical data and DNA samples. Relatively few families, such as those with more than two living, affected relatives willing to participate, are needed to expedite new genetic discoveries.

“Linkage” between a pathogenic genetic variant and disease development is so significant that it can inform a diagnosis. It has also become the basis of many lab models used to study the consequences of gene dysfunction and how to fix it. Linkage studies, like the one my team and I published[13], have identified[14] pathogenic mutations[15] in over[16] 20 genes. Notably, many patients in families with parkinsonism have symptoms that are indistinguishable from typical, late-onset Parkinson’s. Nevertheless, what causes inherited parkinsonism, which typically affects people with earlier-onset disease, may not be the cause of Parkinson’s in the general population.

Genome-wide association studies examine genetic data across a large sample of people.

Conversely, genome-wide association studies, or GWAS[17], compare genetic data from patients with Parkinson’s with unrelated people of the same age, gender and ethnicity who don’t have the disease. Typically, this involves assessing how frequently in both groups over 2 million common gene variants appear. Because these studies require analyzing so many gene variants, researchers need to gather clinical data and DNA samples from over 100,000 people.

Although costly and time-consuming, the findings of genome-wide association studies are widely applicable. Combining the data of these studies has identified many locations in the genome[18] that contribute to the risk of developing Parkinson’s. Currently, there are over 92 locations in the genome[19] that contain about 350 genes potentially involved in the disease. However, GWAS locations can be considered only in aggregate[20]; individual results are not helpful in diagnosis nor in disease modeling, as the contribution of these individual genes to disease risk is so minimal.

Together, “linked” and “associated” discoveries imply a number of molecular pathways are involved in Parkinson’s. Each identified gene and the proteins they encode typically can have more than one effect. The functions of each gene and protein may also vary by cell type. The question is which gene variants, functions and pathways are most relevant to Parkinson’s? How do researchers meaningfully connect this data?

Parkinson’s disease genes

Using linkage analysis, my team and I identified a new genetic mutation for Parkinson’s disease called RAB32 Ser71Arg[21]. This mutation was linked to parkinsonism in three families and found in 13 other people in several countries, including Canada, France, Germany, Italy, Poland, Turkey, Tunisia, the U.S. and the U.K.

Although the affected individuals and families originate from many parts of the world, they share an identical fragment of chromosome 6 that contains RAB32 Ser71Arg. This suggests these patients are all related to the same person[22]; ancestrally, they are distant cousins. It also suggests there are many more cousins to identify.

With further analysis, we found RAB32 Ser71Arg interacts with several proteins previously linked to early-[23] and late-onset parkinsonism[24] as well as nonfamilial[25] Parkinson’s disease[26]. The RAB32 Ser71Arg variant also causes similar dysfunction[27] within cells[28].

Person holding up arm with opposite hand to lift a spoonful of soup
People with Parkinson’s disease experience a gradual loss in their ability to perform daily activities. SimpleImages/Moment via Getty Images[29]

Together, the proteins encoded by these linked genes optimize levels of the neurotransmitter dopamine[30]. Dopamine is lost in Parkinson’s as the cells that produce it progressively die. Together, these linked genes and the proteins they encode regulate[31] specialized[32] autophagy[33] processes[34]. In addition, these encoded proteins enable immunity within cells[35].

Such linked genes support the idea that these causes of inherited parkinsonism evolved to improve survival in early life[36] because they enhance immune response[37] to pathogens. RAB32 Ser71Arg suggest how and why many mutations have originated, despite creating a susceptible genetic background[38] for Parkinson’s in later life.

RAB32 Ser71Arg is the first linked gene researchers have identified that directly connects the dots between prior linked discoveries. The proteins encoded bring together three important functions of the cell: autophagy, immunity and mitochondrial function[39]. While autophagy releases energy stored in the cell’s trash, this needs to be coordinated with another specialized component within the cell, mitochondria, that are the major supplier of energy. Mitochondria also help to control cell immunity because they evolved from bacteria[40] the cell’s immune system recognizes as “self” rather than as an invading pathogen to destroy.

Identifying subtle genetic differences

Finding the molecular blueprint for familial Parkinson’s is the first step to fixing the faulty mechanisms behind the disease. Like the owner’s manual to your car’s engine, it provides a practical guide of what to check when the motor fails.

Just as each make of motor is subtly different, what makes each person genetically susceptible to nonfamilial Parkinson’s disease is also subtly different. However, analyzing genetic data can now test for types of dysfunction in the cell that are hallmarks of Parkinson’s disease. This will help researchers identify environmental factors that influence the risk of developing Parkinson’s, as well as medications that may help protect against the disease.

More patients and families participating in genetic research are needed to find additional components of the engine behind Parkinson’s. Each person’s genome has about 27 million variants[41] of the 6 billion building blocks that make up their genes. There are many more genetic components for Parkinson’s that have yet to be found.

As our discovery illustrates, each new gene that researchers identify can profoundly improve our ability to predict and prevent Parkinson’s.

References

  1. ^ progresses relentlessly (doi.org)
  2. ^ new cases (doi.org)
  3. ^ overall numbers (doi.org)
  4. ^ such as Levodopa (www.ncbi.nlm.nih.gov)
  5. ^ fundamental molecular cause (doi.org)
  6. ^ Many factors may contribute (doi.org)
  7. ^ early studies (doi.org)
  8. ^ geneticist and molecular neuroscientist (scholar.google.com)
  9. ^ new genetic variant linked to Parkinson’s (www.thelancet.com)
  10. ^ In the mid-1990s (doi.org)
  11. ^ Linkage analysis (doi.org)
  12. ^ parkinsonism (doi.org)
  13. ^ my team and I published (www.thelancet.com)
  14. ^ have identified (doi.org)
  15. ^ pathogenic mutations (doi.org)
  16. ^ in over (doi.org)
  17. ^ genome-wide association studies, or GWAS (doi.org)
  18. ^ locations in the genome (doi.org)
  19. ^ over 92 locations in the genome (doi.org)
  20. ^ considered only in aggregate (doi.org)
  21. ^ RAB32 Ser71Arg (www.thelancet.com)
  22. ^ related to the same person (www.thelancet.com)
  23. ^ to early- (doi.org)
  24. ^ late-onset parkinsonism (doi.org)
  25. ^ nonfamilial (doi.org)
  26. ^ Parkinson’s disease (doi.org)
  27. ^ similar dysfunction (doi.org)
  28. ^ within cells (doi.org)
  29. ^ SimpleImages/Moment via Getty Images (www.gettyimages.com)
  30. ^ optimize levels of the neurotransmitter dopamine (doi.org)
  31. ^ regulate (doi.org)
  32. ^ specialized (doi.org)
  33. ^ autophagy (theconversation.com)
  34. ^ processes (doi.org)
  35. ^ immunity within cells (doi.org)
  36. ^ improve survival in early life (doi.org)
  37. ^ enhance immune response (doi.org)
  38. ^ susceptible genetic background (doi.org)
  39. ^ autophagy, immunity and mitochondrial function (doi.org)
  40. ^ evolved from bacteria (theconversation.com)
  41. ^ about 27 million variants (www.genome.gov)

Authors: Matthew Farrer, Professor of Neurology, University of Florida

Read more https://theconversation.com/newly-discovered-genetic-variant-that-causes-parkinsons-disease-clarifies-why-the-condition-develops-and-how-to-halt-it-226435

Metropolitan republishes selected articles from The Conversation USA with permission

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